woof: WooorkFlooows for Bioinformatics

Peter Diakumis

Fri 2019-Nov-29

Section 1 Introduction

woof is a Python application for running bioinformatic workflows with Cromwell and WDL

Installation

Step 1: Clone woof repo

git clone https://github.com/umccr/woof

Step 2: Create conda environment

wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
bash miniconda.sh
conda update -n base -c defaults conda
conda env create -f woof/env/woof.yaml